SRS 8.3.0.6 Update

A new update release for SRS has been made available – it includes a number of usability improvements to the web interface, additional tools to facilitate administration, as well as a range of performance and stability enhancements. The range of supported databanks has been growing steadily; recently support has been added for integration of the iRefIndex, MINT, BioGRID and DIP databanks on protein interaction data. More tools are now supported as well including GLSearch, GGSearc, FastF, FastS and FastM tools (part of the FASTA package) and Clustal Omega. Support for the latest version of the Hmmer package has been updated as well.

You can read the full release notes as well as download the software itself in the SRS 8.3 Downloads area.

SIP Update: Drug-induced Renal Injury

The kidney is inherently prone to toxicity. It is highly vascularised, receiving ~25% of cardiac output, and as a consequence is especially vulnerable to drug-induced injury. Moreover, it is a primary site for the elimination of drugs, which further increases exposure of the kidney to potentially toxic substances. Drug-induced nephrotoxicity is common in clinical practice; drugs account for ~20% of acquired cases of acute renal failure and even more in at-risk populations, such as the elderly or those with underlying chronic kidney disease. A number of widely-used drug classes have been implicated in nephrotoxicity, including the NSAIDs, antibiotics and anticancer agents such as cisplatin.

Drug-induced renal injury is also a major cause of drug attrition in clinical development, accounting for 2% of candidate failures during preclinical studies and 19% during Phase III There is therefore a pressing need to improve prediction of renal toxicity, through the development of biomarkers, in vitro experimental models and better use of legacy information.

With this in mind, the Safety Intelligence Program now includes a rich set of assertions around renal toxicity to complement the existing in-depth intelligence for drug induced liver, muscle, cardiac and vascular injury, carcinogenicity and genotoxicity. This new intelligence includes:

  • Over 35,000 assertions for compounds causing kidney effects, curated and integrated from a variety of public data sources, with intelligence for 6,500 compounds including over 1000 drug molecules.
  • More than 1300 renal observations, including major pathophysiological events such as interstitial nephritis, kidney tubular necrosis and altered glomerular filtration rate.
  • 6,000 assertions describing the effects of 1899 compounds on 73 key body fluid markers of renal function, such as creatinine level and blood urea nitrogen.

Read more about SIP Update: Drug-induced Renal Injury »

SRS 8.3.0.4 Patch Update

We have just released a new patch update for SRS 8.3. This latest update adds a number of new features, as well as general improvements in the usability and stability of SRS. There are about 20 new types of exports (including some new XML formats) available for various databanks in SRS and improved handling of binary data such as images or chemical structure files. There are a number of improvements in the layout and functionality of the web interface using the latest browsers, as well as improved compatibility with the latest platforms.

You can read the full release notes as well as download the software itself in the SRS 8.3 Downloads area.

The latest additions to the databases supported by SRS also include ChEMBL (a database of bioactive small molecules and their activities in biological systems), the KEGG Disease database – (part of the of the KEGG databases suite, describes various diseases, usually with a genetic component), the MEROPS peptidase database, HMDB (a database of compounds in the human metabolism, and the enzymes involved in their metabolization) and DrugBank (a drugs and protein/gene targets database).

You can keep up to date with the latest additions and changes to SRS parsers using the SRS 8.3 parser updates news feed.